PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721356
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 248aa    MW: 26342.3 Da    PI: 5.558
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721356genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-05134155223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                +C++Cg+ F+++     H+r+H
  676721356 134 VCNICGRAFRSWKAVFGHLRSH 155
                6*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.19E-5132159No hitNo description
PROSITE profilePS501579.016133160IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSNPEKMKVD DDNEEEREDS DEQWSDEELA MRNIVLALPA LRISNKNFGG SSAINEVEAR  60
LNEQAVAAAE LVIAAAEEAV MKDKSDGKKK KKVRRPRKTM KLNEEAGGSG NGGEGKNPKK  120
KSSELTNIPN GPPVCNICGR AFRSWKAVFG HLRSHKDRNY QGFLPPPKFS AKTGGVVIPG  180
PNSAFVPVVA GGGRSGGIVA AGGDGGGGGA PGGEVEDDNQ EVTESGTKAK FDLNKSPPKD  240
EEEEDKTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592252.11e-106PREDICTED: zinc finger protein ZAT9
RefseqXP_013649612.11e-106PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A078BYW61e-106A0A078BYW6_BRANA; BnaC01g02990D protein
TrEMBLA0A0D3A1Q61e-106A0A0D3A1Q6_BRAOL; Uncharacterized protein
STRINGBra011628.1-P6e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.12e-31C2H2 family protein